In science today we are witnessing a general shift away from the assumption that the fundamental nature of matter can be considered from the point of view of substance (particles, quanta) to the concept that the fundamental nature of the material world is knowable only through its underlying patterns of wave forms.
Both our organs of perception and the phenomenal world we perceive seem to be best understood as systems of pure pattern, or as geometric structures of form and proportion. Therefore, when many ancient cultures chose to examine reality through the metaphors of geometry and music (music being the study of the proportional laws of sound frequency), they were already very close to the position of our most contemporary science.